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bootscan implemented in simplot v3.5.1 software  (Simplot Science)

 
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    Simplot Science bootscan implemented in simplot v3.5.1 software
    Investigation of human immunodeficiency virus (HIV) genome recombination in HIV-1 samples from Angola. <t>Bootscan</t> analysis was performed in SimPlot software using a 400 nt sliding window and 20 nt increments. (A) Complete genome (ANG.44 and ANG.78), (B) Partial genome (ANG.05, ANG.71, and ANG.113), and (C) ANG.37. The legend in the lower corner indicates the colors that represent the different clades of HIV-1.
    Bootscan Implemented In Simplot V3.5.1 Software, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/bootscan implemented in simplot v3.5.1 software/product/Simplot Science
    Average 90 stars, based on 1 article reviews
    bootscan implemented in simplot v3.5.1 software - by Bioz Stars, 2026-04
    90/100 stars

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    1) Product Images from "Identification of a new circulating recombinant form of human immunodeficiency virus type 1, CRF124_cpx involving subtypes A, G, H, and CRF27_cpx in Angola"

    Article Title: Identification of a new circulating recombinant form of human immunodeficiency virus type 1, CRF124_cpx involving subtypes A, G, H, and CRF27_cpx in Angola

    Journal: Frontiers in Microbiology

    doi: 10.3389/fmicb.2022.992640

    Investigation of human immunodeficiency virus (HIV) genome recombination in HIV-1 samples from Angola. Bootscan analysis was performed in SimPlot software using a 400 nt sliding window and 20 nt increments. (A) Complete genome (ANG.44 and ANG.78), (B) Partial genome (ANG.05, ANG.71, and ANG.113), and (C) ANG.37. The legend in the lower corner indicates the colors that represent the different clades of HIV-1.
    Figure Legend Snippet: Investigation of human immunodeficiency virus (HIV) genome recombination in HIV-1 samples from Angola. Bootscan analysis was performed in SimPlot software using a 400 nt sliding window and 20 nt increments. (A) Complete genome (ANG.44 and ANG.78), (B) Partial genome (ANG.05, ANG.71, and ANG.113), and (C) ANG.37. The legend in the lower corner indicates the colors that represent the different clades of HIV-1.

    Techniques Used: Virus, Software

    Determination of the new circulating recombinant form (CRF) among HIV-1 samples circulating in Angola. (A) Bootscan analysis of the sequence ANG.44 was performed in SimPlot software using a 400 nt sliding window and 20 nt increments. (B) Genomic structure of CRF124_cpx colored according to the HIV-1 subtyping. The mosaic map was generated using the Recombinant HIV-1 Drawing Tool ( https://www.hiv.lanl.gov/content/sequence/DRAW_CRF/recom_mapper.html ). The maximum likelihood tree (ML) was performed to confirmation of the HIV-1 subtype of each fragment. ML tree implementing nucleotide substitution model General Time Reversible (GTR), indicating the phylogenetic relationships between pure HIV-1 subtypes and CRF124_cpx sequences. ALRT values were represented only if >0.90.
    Figure Legend Snippet: Determination of the new circulating recombinant form (CRF) among HIV-1 samples circulating in Angola. (A) Bootscan analysis of the sequence ANG.44 was performed in SimPlot software using a 400 nt sliding window and 20 nt increments. (B) Genomic structure of CRF124_cpx colored according to the HIV-1 subtyping. The mosaic map was generated using the Recombinant HIV-1 Drawing Tool ( https://www.hiv.lanl.gov/content/sequence/DRAW_CRF/recom_mapper.html ). The maximum likelihood tree (ML) was performed to confirmation of the HIV-1 subtype of each fragment. ML tree implementing nucleotide substitution model General Time Reversible (GTR), indicating the phylogenetic relationships between pure HIV-1 subtypes and CRF124_cpx sequences. ALRT values were represented only if >0.90.

    Techniques Used: Recombinant, Sequencing, Software, Generated



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    Investigation of human immunodeficiency virus (HIV) genome recombination in HIV-1 samples from Angola. <t>Bootscan</t> analysis was performed in SimPlot software using a 400 nt sliding window and 20 nt increments. (A) Complete genome (ANG.44 and ANG.78), (B) Partial genome (ANG.05, ANG.71, and ANG.113), and (C) ANG.37. The legend in the lower corner indicates the colors that represent the different clades of HIV-1.
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    Investigation of human immunodeficiency virus (HIV) genome recombination in HIV-1 samples from Angola. <t>Bootscan</t> analysis was performed in SimPlot software using a 400 nt sliding window and 20 nt increments. (A) Complete genome (ANG.44 and ANG.78), (B) Partial genome (ANG.05, ANG.71, and ANG.113), and (C) ANG.37. The legend in the lower corner indicates the colors that represent the different clades of HIV-1.
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    Investigation of human immunodeficiency virus (HIV) genome recombination in HIV-1 samples from Angola. <t>Bootscan</t> analysis was performed in SimPlot software using a 400 nt sliding window and 20 nt increments. (A) Complete genome (ANG.44 and ANG.78), (B) Partial genome (ANG.05, ANG.71, and ANG.113), and (C) ANG.37. The legend in the lower corner indicates the colors that represent the different clades of HIV-1.
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    Investigation of human immunodeficiency virus (HIV) genome recombination in HIV-1 samples from Angola. Bootscan analysis was performed in SimPlot software using a 400 nt sliding window and 20 nt increments. (A) Complete genome (ANG.44 and ANG.78), (B) Partial genome (ANG.05, ANG.71, and ANG.113), and (C) ANG.37. The legend in the lower corner indicates the colors that represent the different clades of HIV-1.

    Journal: Frontiers in Microbiology

    Article Title: Identification of a new circulating recombinant form of human immunodeficiency virus type 1, CRF124_cpx involving subtypes A, G, H, and CRF27_cpx in Angola

    doi: 10.3389/fmicb.2022.992640

    Figure Lengend Snippet: Investigation of human immunodeficiency virus (HIV) genome recombination in HIV-1 samples from Angola. Bootscan analysis was performed in SimPlot software using a 400 nt sliding window and 20 nt increments. (A) Complete genome (ANG.44 and ANG.78), (B) Partial genome (ANG.05, ANG.71, and ANG.113), and (C) ANG.37. The legend in the lower corner indicates the colors that represent the different clades of HIV-1.

    Article Snippet: Recombination analyses were performed using a Bootscan implemented in SimPlot v3.5.1 software with the following parameters: 400 nucleotides (nt) window, 20 nt increments, and NJ method under Kimura’s two-parameter correction with 100 bootstrap replicates ( ).

    Techniques: Virus, Software

    Determination of the new circulating recombinant form (CRF) among HIV-1 samples circulating in Angola. (A) Bootscan analysis of the sequence ANG.44 was performed in SimPlot software using a 400 nt sliding window and 20 nt increments. (B) Genomic structure of CRF124_cpx colored according to the HIV-1 subtyping. The mosaic map was generated using the Recombinant HIV-1 Drawing Tool ( https://www.hiv.lanl.gov/content/sequence/DRAW_CRF/recom_mapper.html ). The maximum likelihood tree (ML) was performed to confirmation of the HIV-1 subtype of each fragment. ML tree implementing nucleotide substitution model General Time Reversible (GTR), indicating the phylogenetic relationships between pure HIV-1 subtypes and CRF124_cpx sequences. ALRT values were represented only if >0.90.

    Journal: Frontiers in Microbiology

    Article Title: Identification of a new circulating recombinant form of human immunodeficiency virus type 1, CRF124_cpx involving subtypes A, G, H, and CRF27_cpx in Angola

    doi: 10.3389/fmicb.2022.992640

    Figure Lengend Snippet: Determination of the new circulating recombinant form (CRF) among HIV-1 samples circulating in Angola. (A) Bootscan analysis of the sequence ANG.44 was performed in SimPlot software using a 400 nt sliding window and 20 nt increments. (B) Genomic structure of CRF124_cpx colored according to the HIV-1 subtyping. The mosaic map was generated using the Recombinant HIV-1 Drawing Tool ( https://www.hiv.lanl.gov/content/sequence/DRAW_CRF/recom_mapper.html ). The maximum likelihood tree (ML) was performed to confirmation of the HIV-1 subtype of each fragment. ML tree implementing nucleotide substitution model General Time Reversible (GTR), indicating the phylogenetic relationships between pure HIV-1 subtypes and CRF124_cpx sequences. ALRT values were represented only if >0.90.

    Article Snippet: Recombination analyses were performed using a Bootscan implemented in SimPlot v3.5.1 software with the following parameters: 400 nucleotides (nt) window, 20 nt increments, and NJ method under Kimura’s two-parameter correction with 100 bootstrap replicates ( ).

    Techniques: Recombinant, Sequencing, Software, Generated